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Publications

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2024

  • Fuzessy, L., Pavoine, S., ..., Sol, D. (2024) Heterogeneous landscapes do not compensate for the loss of species and functions in a deforested megadiverse tropical forest. Conservation Biology, In press.

  • Leal-Santos, G., Tambosi, L.R., Pavoine, S., Martins, M. (2024) Multiscale effects of habitat changes on diversity of rainforest snakes. Biodiversity and Conservation, In press.

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2023

  • Pavoine, S., Ricotta, C. (2023) Identifying functionally distinctive and threatened species . Biological Conservation 284, 110170. https://doi.org/10.1016/j.biocon.2023.110170

  • Ricotta, C., Pierce, S., Dalle Fratte, M., Carboni, M., Cerabolini, B., Pavoine, S. (2023) Quantifying the extent of plant functional specialization using Grime’s CSR strategies. Ecological Indicators 148, 110066. https://doi.org/10.1016/j.ecolind.2023.110066

  • Ricotta, C., Podani, J., Schmera, D., Bacaro, G., Maccherini, S., Pavoine, S. (2023) The ternary diagram of functional diversity. Methods in Ecology and Evolution 14, 1168-1174. https://doi.org/10.1111/2041-210X.14100

  • Yang, G., Pavoine, S. (2023) Conservation priorities for diprotodonts according to evolutionary distinctiveness and extinction risk. Biodiversity and Conservation 32, 3447-3464. https://doi.org/10.1007/s10531-023-02673-0

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2022

  • Barnagaud, J.-Y., Mossion, R., Brockerhoff, E.G., Dufour, P., Pavoine, S., Deconchat, M., Barbaro, L. (2022) Trait-habitat associations explain novel bird assemblages mixing native and alien species across New-Zealand landscapes. Diversity and Distributions 28, 38-52. https://doi.org/10.1111/ddi.13432

  • Mérillet, l., Robert, M., Hernvann, P.-Y., Pecuchet, L., Pavoine, S., Mouchet, M., Primicerio, R., Kopp, D. (2022) Effects of life-history traits and network topological characteristics on the robustness of marine food web. Global Ecology and Conservation 34, e02048. https://doi.org/10.1016/j.gecco.2022.e02048

  • Pavoine, S., Ricotta, C. (2022) Trade-offs in the conservation of phylogenetically distinctive species. Biological Conservation 270, 109565. https://doi.org/10.1016/j.biocon.2022.109565

  • Ricotta, C., Bacaro, G., Maccherini, S., Pavoine, S. (2022) Functional imbalance not functional evenness is the third component of community structure. Ecological Indicators 140, 109035. https://doi.org/10.1016/j.ecolind.2022.109035

  • Ricotta, C., Pavoine, S. (2022) A new parametric measure of functional dissimilarity: bridging the gap between the Bray-Curtis dissimilarity and the Euclidean distance. Ecological Modelling 466, 109880. https://doi.org/10.1016/j.ecolmodel.2022.109880

  • Royaux C, Norvez O, Jossé M, Arnaud E, Sananikone J, Pavoine S, Pelletier D, Mihoub J-B, Le Bras Y (2022) From Biodiversity Observation Networks to Datasets and Workflows Supporting Biodiversity Indicators, a French Biodiversity Observation Network (BON) Essential Biodiversity Variables (EBV) Operationalization Pilot using Galaxy and Ecological Metadata Language. Biodiversity Information Science and Standards 6: e94957. https://doi.org/10.3897/biss.6.94957

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2021

  • Merillet, L., Pavoine, S., Kopp, D., Robert, M., Mouchet, M. (2021) Biomass of slow life history species increases as local bottom trawl effort decreases in the Celtic Sea. Journal of Environmental Management 290, 112634. https://doi.org/10.1016/j.jenvman.2021.112634

  • Pavoine, S., Ricotta, C. (2021) On the relationships between rarity, uniqueness, distinctiveness, originality and functional/phylogenetic diversity. Biological Conservation 263, 109356. https://doi.org/10.1016/j.biocon.2021.109356

  • Prinzing, A., Pavoine, S., Jactel, H., Hortal, J., Hennekens, S., Ozinga, W., Bartish, I., Helmus, M., Kühn, I., Moen, D.S, Weiher, E., Braendle, M., Winter, M., Violle, C., Venail, P., Purschke, O., Yguel, B. (2021) Disturbed habitats locally reduce the signal of deep evolutionary history in functional traits of plants. New Phytologist 232, 1849-1862. https://doi.org/10.1111/nph.17705

  • Ricotta, C., Kosman, E., Caccianiga, M., Cerabolini, B.E.L., Pavoine, S. (2021) On two dissimilarity-based measures of functional beta diversity. Ecological Informatics 66, 101458. https://doi.org/10.1016/j.ecoinf.2021.101458

  • Ricotta, C., Kosman, E., Laroche, F., Pavoine, S. (2021) Beta redundancy for functional ecology. Methods in Ecology and Evolution, 12, 1062-1069. https://doi.org/10.1111/2041-210X.13587

  • Ricotta, C., Pavoine, S., Cerabolini, B.E.L., Pillar, V.D. (2021) A new method for indicator species analysis in the framework of multivariate analysis of variance. Journal of Vegetation Science, 32, e13013. https://doi.org/10.1111/jvs.13013

  • Ricotta, C., Szeidl, L., Pavoine, S. (2021) Towards a unifying framework for diversity and dissimilarity coefficients. Ecological Indicators 129, 107971. https://doi.org/10.1016/j.ecolind.2021.107971

  • Robuchon, M., Pavoine, S., Véron, S., Delli, G., Faith, D.P., Mandrici, A., Pellens, R., Dubois, G., Leroy, B. (2021) Revisiting species and areas of interest for conserving global mammalian phylogenetic diversity. Nature communications, 12, 3694. https://doi.org/10.1038/s41467-021-23861-y

  • Swan, C.M., Brown, B., Borowy, D., Cavender-Bares, J., Jeliazkov, A., Knapp, S., Lososová, Z., Padullés Cubino, J., Pavoine, S., Ricotta, C., Sol, D. (2021) A framework for understanding how biodiversity patterns unfold across multiple spatial scales in urban ecosystems. Ecosphere 12, e03650. https://doi.org/10.1002/ecs2.3650

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2020

  • Jeliazkov, A., Mijatovic, D., Chantepie, S., Arlettaz, R., Andrew, N., Barbaro, L., ..., Pavoine, S., ..., Chase J. (2020) A global database for metacommunity ecology, integrating species, traits, environment and space. Scientific Data, 7(6).

  • Kondratyeva, A., Knapp, S., Durka, W.,  Kühn, I., Vallet, J., Machon, N., Martin, G., Motard, E., Grandcolas, P., Pavoine, S. (2020) Urbanization effects on biodiversity revealed by a two-scale analysis of species functional uniqueness versus redundancy. Frontiers in Ecology and Evolution 8:73.
    doi: 10.3389/fevo.2020.00073. https://www.frontiersin.org/articles/10.3389/fevo.2020.00073/full

  • Llopis-Belenguer, C., Pavoine, S., Blasco-Costa, I., Balbuena, J. A. (2020). Assembly rules of helminth parasite communities in grey mullets: combining components of diversity. International Journal for Parasitology, 50: 1089-1098.

  • Mérillet, L., Kopp, D., Robert, M., Mouchet, M., Pavoine, S. (2020) Environment outweighs the effects of fishing in regulating demersal community structure in an exploited marine ecosystem. Global Change Biology 26: 2106-2119. https://doi.org/10.1111/gcb.14969

  • Pavoine, S. (2020) adiv: an R package to analyse biodiversity in ecology. Methods in Ecology and Evolution. 11, 1106-1112. https://doi.org/10.1111/2041-210X.13430

  • Ricotta, C., Laroche, F., Szeidl, L., Pavoine, S. (2020) From alpha to beta functional and phylogenetic redundancy. Methods in Ecology and Evolution. 11: 487-493.

  • Saito, V.S., Siqueira, T., Bini, L.M., Costa-Pereira, R., Pereira Santos, E., Pavoine, S. (2020). Comparing taxon- and trait-environment relationships in stream communities. Ecological Indicators 117: 106625.

  • Sol, D., Trisos, C., Murria, C., Jeliazkov, A., González-Lagos, C., Pigot, A., Ricotta, C., Swan, C., Tobias, J., Pavoine, S. (2020). The worldwide impact of urbanisation on avian functional diversity. Ecology Letters 23: 962-972.

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2019

  • Kondratyeva A, Grandcolas P, Pavoine S (2019) Reconciling the concepts and measures of diversity, rarity and originality in ecology and evolution. Biological Reviews 94: 1317-1337 (Open Access). https://onlinelibrary.wiley.com/doi/full/10.1111/brv.12504

  • Pavoine S (2019) An ordination approach to explore similarities among communities. Journal of Theoretical Biology 462: 85-96.

  • Pavoine S, Bonsall MB, Davies TJ, Masi S (2019) Mammal extinctions and the increasing isolation of humans on the tree of life. Ecology and Evolution 9, 914-924 (Open Access). https://onlinelibrary.wiley.com/doi/full/10.1002/ece3.4630 (previous version in BioRxiv preprint, https://doi.org/10.1101/154526)

  • Pavoine S, Ricotta C (2019) A simple translation from indices of species diversity to indices of phylogenetic diversity. Ecological Indicators 101: 552-561.

  • Pavoine S, Ricotta C (2019) Measuring functional dissimilarity among plots: adapting old methods to new questions. Ecological Indicators 97: 67-72.

  • Podani J, Pavoine S, Ricotta C (2019) A generalized framework for analyzing taxonomic, phylogenetic and functional community structure based on presence-absence data. Mathematics (Special Issue on New Paradigms and Trends in Quantitative Ecology) 6: 250 (Open Access). https://www.mdpi.com/2227-7390/6/11/250

  • Ricotta C, Acosta A, Bacaro G, Carboni M, Chiarucci A, Rocchini D, Pavoine S (2019) Rarefaction of beta diversity. Ecological Indicators 107: 105606.

  • Robuchon M, Faith DP, Julliard R, Leroy B, Pellens R, Robert A, Thévenin C, Véron S, Pavoine S (2019) Species splitting increases estimates of evolutionary history at risk. Biological Conservation 235: 27-35 (Open Access). https://www.sciencedirect.com/science/article/pii/S0006320718312400

  • Ulloa JS, Aubin T, Llusia D, Courtois EA, Fouquet A, Gaucher P, Pavoine S, Sueur J (2019) Explosive breeding in tropical anurans: environmental triggers, community composition and acoustic structure. BMC Ecology 19(28).

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2018

  • Faith D, Veron S, Pavoine S, Pellens R (2018) Indicators for the Expected Loss of Phylogenetic Diversity. In: (R Scherson and DP Faith eds.) Phylogenetic Diversity. Applications and Challenges in Biodiversity Science. Springer. pp. 73-91.

  • Head CEI, Koldewey H, Pavoine S, Pratchett MS, Rogers AD, Taylor ML, Bonsall MB (2018) Trait and phylogenetic diversity patterns provide insights into community assembly of reef-associated shrimp (Palaemonidae) at different spatial scales across the Chagos archipelago. Ecology and Evolution 8: 4098-4107.

  • Ricotta C, Bacaro G, Caccianiga M, Cerabolini B, Pavoine S (2018) A new method for quantifying the phylogenetic redundancy of biological communities. Oecologia 186: 339-346.

  • Saito V, Laroche F, Siquiera T, Pavoine S (2018) Ecological versatility and the assembly of multiple competitors: cautionary notes for assembly inferences. Ecology 99: 1173-1183.

  • Thioulouse J, Dray S, Dufour A-B, Siberchicot A, Jombart J, Pavoine S (2018) Multivariate Analysis of Ecological Data with ade4. Springer. 340 pages.

  • Veron S, Faith D, Pellens R, Pavoine S (2018) Priority Areas for phylogenetic diversity: maximizing gains in the Mediterranean basin. In: (R Scherson and DP Faith eds.) Phylogenetic Diversity. Applications and Challenges in Biodiversity Science. Springer. pp. 145-166.

  • Veron S, Fontaine C, Dubos N, Clergeau P, Pavoine S (2018) Predicting the impacts of co-extinctions on phylogenetic dversity in mutualistic networks. Biological Conservation 219: 161-171.

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2017

  • Pavoine S, Bonsall MB, Dupaix A, Jacob U, Ricotta C (2017) From phylogenetic to functional originality: guide through indices and new developments. Ecological Indicators 82:196-205.

  • Ponge J-F, Zuccon D, Elias M, Pavoine S, Henry P-Y, Théry M, Guilbert E (2017) Ancestrality and evolution of trait syndromes in finches (Fringillidae). Ecology and Evolution 7:9935-9953.

  • Sarthou C, Pavoine S, Gasc J-P, de Massary J-C, Ponge J-F (2017) From inselberg to inselberg: floristic patterns across scales in French Guiana (South America). Flora - Morphology, Distribution, Functional Ecology of Plants 229:147-158.

  • Sol D, Bartomeus I, González-Lagos C, Pavoine S (2017) Urbanisation and the loss of phylogenetic diversity in birds. Ecology Letters 20:721-729. [Highlighted in Nature https://www.nature.com/research-highlights - 28 April 2017]

  • Tucker CM, Cadotte MW, Carvalho SB, Davies J, Ferrier S, Fritz SA, Grenyer R, Helmus MR, Jin LS, Mooers AO, Pavoine S, Purschke O, Redding DW, Rosauer DF, Winter M, Mazel F (2017) A guide to phylogenetic metrics for conservation, community ecology and macroecology. Biological Reviews 92:698-715.

  • Veron S, Davies TJ, Cadotte MW, Clergeau P, Pavoine S (2017) Predicting loss of evolutionary history: where are we? Biological Reviews 92:271-291.

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2016

  • Pavoine S (2016) A guide through a family of phylogenetic dissimilarity measures among sites. Oikos 125:1719–1732. (Earlier version in arXiv preprint. arXiv:1506.06359)

  • Pavoine S, Marcon E, Ricotta C (2016) "Equivalent numbers" for species, phylogenetic, or functional diversity in a nested hierarchy of multiple scales. Methods in Ecology and Evolution 7:1152-1163. [Selected for inclusion in a Methods in Ecology and Evolution virtual issue published in in Jan 2017 on Biogeography and edited by Pedro Perez-Neto; http://www.methodsinecologyandevolution.org/view/0/virtualIssues/biogeography_vi.html]

  • Ricotta, C, de Bello, F, Moretti, M, Caccianiga, M, Cerabolini, BE, Pavoine, S (2016). Measuring the functional redundancy of biological communities: A quantitative guide. Methods in Ecology and Evolution 7:1386–1395.

  • Ricotta, C, Podani, J, Pavoine, S (2016) A family of functional dissimilarity measures for presence and absence data. Ecology and Evolution 6:5383-5389.

  • Saito, VS, Cianciaruso, MV, Siqueira, T, Fonseca‐Gessner, AA, Pavoine, S (2016). Phylogenies and traits provide distinct insights about the historical and contemporary assembly of aquatic insect communities. Ecology and Evolution 6:2925-2937.

  • Veron S, Clergeau P, Pavoine S (2016) Loss and conservation of evolutionary history in the Mediterranean Basin. BMC Ecology 16:43.

  • Veron S, Penone C, Clergeau P, Costa GC, Oliveira BF, São-Pedro VA, Pavoine S (2016) Integrating data-deficient species in analyses of evolutionary history loss. Ecology and Evolution 6:8502-8514.

  • Yguel B, Jactel H, Pearse SI, Moen D, Winter M, Hortal J, Helmus RM, Kühn I, Pavoine S, Purschke O, Weiher E, Violle C, Ozinga W, Brändle M, Bartish I, Prinzing A (2016) The evolutionary legacy of diversification predicts ecosystem function. American Naturalist 188:398-410

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2015

  • Desjonquères C, Rybak F, Depraetere M, Gasc A, LeViol I, Pavoine S, Sueur J (2015) First description of underwater acoustic diversity in three temperate ponds. PeerJ e1393.

  • Dray S, Aguirre de Cárcer D, Pavoine S (2015) Considering external information to improve the phylogenetic comparison of microbial communities: a new approach based on constrained Double Principal Coordinates Analysis (cDPCoA). Molecular Ecology Resources 15:242-249.

  • Gasc A, Pavoine S, Lellouch L, Grandcolas P, Sueur J (2015) Acoustic indices for biodiversity assessments: analyses of bias based on simulated bird assemblages and recommendations for field surveys. Biological Conservation 191:306-312.

  • Ricotta C, Bacaro G, Pavoine S (2015) A cautionary note on some phylogenetic dissimilarity measures. Journal of Plant Ecology 8:12-16. [Editor choice]

  • Ricotta C, Pavoine S (2015) Measuring similarity among plots including similarity among species: An extension of traditional approaches. Journal of Vegetation Science 26:1061-1067.

  • Ricotta C, Pavoine S (2015) A multiple-site dissimilarity measure for species presence/absence data and its relationship with nestedness and turnover. Ecological Indicators 54:203-206.

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2014

  • Dray S, Choler P, Dolédec S, Peres-Neto PR, Thuiller W, Pavoine S, ter Braak C (2014) Combining the fourth-corner and the RLQ methods for assessing trait responses to environmental variation. Ecology 95:14-21.

  • Gimenez O, Buckland ST, Morgan BJT, Bez N, Bertrand S, Choquet R, Dray S, Etienne M-P, Fewster R, Gosselin F, Merigot B, Monestiez P, Morales JM, Mortier F, Munoz F, Ovaskainen O, Pavoine S, Pradel R, Schurr FM, Thomas L, Thuiller W, Trenkel V, de Valpine P, Rexstad E (2014) Statistical ecology comes of age. Biology Letters 10:20140698.

  • Lellouch L, Pavoine  S, Jiguet F, Glotin H, Sueur J (2014) Monitoring temporal change of bird communities with dissimilarity acoustic indices. Methods in Ecology and Evolution 5:495-505.

  • Pavoine S, Baguette M, Stevens VM, Leibold MA, Turlure C, Bonsall MB (2014) Life-history traits, but not phylogeny, drive compositional patterns in a butterfly metacommunity. Ecology 95:3304-3313.

  • Pavoine S, Izsák J (2014) New biodiversity measure that includes consistent interspecific and intraspecific components. Methods in Ecology and Evolution 5:165-172. [Selected for inclusion in a Methods in Ecology and Evolution virtual issue published in in June 2015 on Advances in Phylogenetic Methods and edited by Jana Vamosi; http://www.methodsinecologyandevolution.org/view/0/virtualIssues/phylogeneticmethodsvi.html]

  • Pavoine S, Ricotta C (2014) Functional and phylogenetic similarity among communities. Methods in Ecology and Evolution 5:666-675. [Selected for inclusion in a Methods in Ecology and Evolution virtual issue published in in June 2015 on Advances in Phylogenetic Methods and edited by Jana Vamosi]

  • Prinzing A, d’Haese C, Pavoine S, Ponge J-F (2014) Species living in harsh environments have low clade rank and are localised on former Laurasian continents - the case of Willemia (Collembola). Journal of Biogeography 41:353-365.

  • Rodriguez A, Gasc A, Pavoine S, Grandcolas P, Gaucher P, Sueur J (2014) Temporal and spatial dynamics of animal sound within a neotropical forest. Ecological Informatics 21:133-143.

  • Sueur J, Farina A, Gasc A, Pieretti N, Pavoine S (2014) Acoustic indices for biodiversity assessment and landscape investigation. Acta Acustica 100:772-781.

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2013

  • Clavel J, Poulet N, Porcher E, Blanchet S, Grenouillet G, Pavoine S, Seon-Massin N, Argillier C, Daufresne M, Teillac-Deschamp P, Julliard R (2013) A new freshwater biodiversity indicator based on fish community assemblages. PloS One 8:e80968.

  • Gasc A, Sueur J, Jiguet F, Devictor V, Grandcolas P, Burrow C, Depraetere M, Pavoine S (2013) Assessing biodiversity with sound: do acoustic diversity indices reflect phylogenetic and functional diversities of bird communities? Ecological indicators 25:279-287.

  • Gasc A, Sueur J, Pavoine S, Pellens R, Grandcolas P (2013) Biodiversity sampling using a global acoustic approach: contrasting sites with microendemics in New Caledonia. PloS One 8:e65311.

  • Mason N, deBello F, Mouillot D, Pavoine S, Dray S (2013) A guide for using functional diversity indices to reveal changes in assembly processes along ecological gradients. Journal of Vegetation Science 24:794-806.

  • Mason N. & Pavoine S (2013) Does trait conservatism guarantee that indicators of phylogenetic community structure will reveal niche-based assembly processes along stress gradients? Journal of Vegetation Science 24:820-833.

  • Ozinga W, Colles A, Bartish I, Hennion F, Hennekens S, Pavoine S, Poschlod P, Hermant M, Schaminée J, Prinzing A (2013) Specialists leave fewer descendants within a region than generalists. Global Ecology and Biogeography 22:213-222.

  • Pavoine S, Blondel J, Dufour A.-B, Gasc A, Bonsall MB (2013) A new technique for analysing interacting factors affecting biodiversity patterns: crossed-DPCoA. PloS One 8:e54530.

  • Pavoine S, Gasc A, Bonsall MB, Mason NWH (2013) Correlations between phylogenetic and functional diversity: mathematical artefacts or true ecological and evolutionary processes? Journal of Vegetation Science 24:781-793.

  • Pavoine S, Ricotta C (2013) Testing for phylogenetic signal in biological traits: the ubiquity of cross-product statistics. Evolution 67:828-840.

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2012

  • Depraetere M, Pavoine S, Jiguet F, Gasc A, Duvail S, Sueur J (2012) Monitoring animal diversity using acoustic indices: implementation in a temperate woodland. Ecological Indicators 13:46-54.

  • Hardy O, Pavoine S (2012) Assessing phylogenetic signal with measurement error: a comparison of Mantel tests, Blomberg et al.’s K and phylogenetic distograms. Evolution 66:2614-2621.

  • Izsak J, Pavoine S (2012) Links between the species abundance distribution and the shape of the corresponding rank abundance curve. Ecological Indicators 14:1-6.

  • Jono C, Pavoine S (2012) Threat diversity will erode mammalian phylogenetic diversity in the near future. PloS One 7:e46235.

  • Mouquet N, Devictor V, Meynard CN, Munoz F, Bersier L-F, Chave J, Couteron P, Dalecky A, Fontaine C, Gravel D, Hardy OJ, Jabot F, Lavergne S, Leibold MS, Mouillot D, Münkemüller T, Pavoine S, Prinzing A, Rodrigues ASL, Rohr RP, Thébault E, Thuiller W (2012) Ecophylogenetics: advances and perspectives. Biological reviews 87:769-785.

  • Pavoine S (2012) Clarifying and developing the analyses of biodiversity: towards a generalization of current approaches. Methods in Ecology and Evolution 3:509-518.

  • Politi Bertoncini A, Machon N, Pavoine S, Muratet A (2012) Local gardening practices shape urban lawn floristic communities. Landscape and Urban Planning 105:53-61.

  • Ricotta C, Pavoine S, Bacaro G, Acosta, A (2012) Functional rarefaction for species abundance data. Methods in Ecology and Evolution 3:519-525.

  • Rolland J, Cadotte M, Davies J, Devictor V, Lavergne S, Mouquet N, Pavoine S, Rodrigues A, Thuiller W, Turcati L, Winter M, Zupan L, Jabot F, Morlon H (2012) Using phylogenies in conservation: new perspectives. Biology Letters 8:692-694.

  • Sueur J, Gasc A, Grandcolas P, Pavoine S (2012) Global estimation of animal diversity using automatic acoustic sensors. In: Sensors for ecology - Towards integrated knowledge of ecosystems (J-F Le Galliard, J-M Guarini and F Gaill eds). pp 99-117. CNRS. Paris.

 

2011

  • Izsak J, Pavoine S (2011) New concentration measures as kinds of the quadratic entropy. Ecological Indicators 11:540-544.

  • Kerbiriou C, Bargain B, Leviol I, Pavoine S (2011) Diet and fuelling of the globally threatened aquatic warbler Acrocephalus paludicola at autumn migration stopover as compared with two congeners. Animal Conservation 14:261-270.

  • Pavoine S, Bonsall M (2011) Measuring biodiversity to explain community assembly: a unified approach. Biological Reviews 86:792-812.

  • Pavoine S, Vela E, Gachet S, de Bélair G, Bonsall MB (2011) Linking patterns in phylogeny, traits, abiotic variables and space: a novel approach to linking environmental filtering and plant community assembly. Journal of Ecology 99:165-175.

 

2010

  • Baraloto C, Marcon E, Morneau, F, Pavoine S, Roggy J-C (2010) Integrating functional diversity into tropical forest plantation designs to study ecosystem processes. Annals of Forest Science 67:303.

  • Jombart T, Pavoine S, Devillard S, Pontier D (2010) Putting phylogeny into the analysis of biological traits: a methodological approach. Journal of Theoretical Biology 264:693-701.

  • Pavoine S, Baguette M, Bonsall MB (2010) Decomposition of trait diversity among the nodes of a phylogenetic tree. Ecological Monographs 80:485-507.

  • Sarthou C, Larpin D, Fonty E, Pavoine S, Ponge J-F (2010) Stability of plant communities along a tropical inselberg ecotone in French Guiana (South America). Flora 205:682-694.

  • Stevens V, Pavoine S, Baguette M (2010) Variation within and between closely related species uncovers high intra-specific variability in dispersal. PloS ONE 5:e11123.

  • Vallet J, Daniel H, Beaujouan V, Rozé F, Pavoine S (2010) Using biological traits to assess how urbanization filters plant species of small woodlands. Applied Vegetation Science 13:412-424.

 

2009

  • Duyck P-F, Pavoine S, Tixier P, Chabrier C, Quénéhervé P (2009) Host range as an axis of niche partitioning in the plant-feeding nematode community of banana agroecosystems. Soil Biology and Biochemistry 41:1139-1145.

  • Pavoine S, Bonsall M (2009) Biological diversity: distinct distributions can lead to the maximization of Rao’s quadratic entropy. Theoretical Population Biology 75:153-163.

  • Pavoine S, Love M, Bonsall M (2009) Hierarchical partitioning of evolutionary and ecological patterns in the organization of phylogenetically-structured species assemblages: application to rockfish (genus: Sebastes) in the Southern California Bight. Ecology Letters 12:898-908.

  • Pavoine S, Vallet J, Dufour A-B, Gachet S, Daniel H (2009) On the challenge of treating various types of variables: application for improving the measurement of functional diversity. Oikos 118:391-402.

  • Rambaud M, Combroux I, Haury J, Moret J, Machon N, Zavodna M, Pavoine S (2009) Relationships between channelization structures, environmental characteristics, and plant communities, among four French streams of the Seine-Normandy’s catchment. Journal of the North American Benthological Society 28:596-610.

  • Rambaud M, Pavoine S, Machon N, Moret J, Combroux I (2009) Does channelization modify spatial and temporal organization of macrophyte communities and their physical habitat? Fundamental and Applied Limnology 174:159-172.

 

2008

  • Duyck P-F, David P, Pavoine S, Quilici S (2008) Can host-range allow niche differentiation of invasive polyphagous fruit flies (Diptera: Tephritidae) in La Réunion? Ecological Entomology 33:1-14.

  • Pavoine S, Ollier S, Pontier D, Chessel D (2008) Testing for phylogenetic signal in phenotypic traits: new matrices of phylogenetic proximities. Theoretical Population Biology 73:79-91.

  • Sueur J, Pavoine S, Hamerlynck O, Duvail S (2008) Rapid acoustic survey for biodiversity appraisal. PloS ONE 3:e4065.

 

2007

  • Pavoine S, Ollier S, Pontier D, Chessel D (2007) Testing for phylogenetic signal in phenotypic traits: new matrices of phylogenetic proximities. Theoretical Population Biology 73:79-91.

  • Pavoine S, Bailly X (2007) New analysis for consistency among markers in the study of genetic diversity: development and application to the description of bacterial diversity. BMC Evolutionary Biology 7:156.

  • Pavoine S, Blondel J, Baguette M, Chessel D (2007) A new technique for ordering asymmetrical three-dimensional data sets in ecology. Ecology 88:512-523.

 

2006

  • Dufour A.B, Pavoine S, Chessel D (2006) Exemple de démarche biométrique : une étude de la variabilité génétique humaine par la double analyse en coordonnées principales. Revue de la Société de Biométrie Humaine “Biométrie humaine et anthropologie”. Tome 23, n°1-2.

  • Pavoine S (2006) Dissimilarity coefficient. In: Encyclopedia of Measurement and Statistics (NJ Salkind ed). Sage Publications.

 

2005

  • Pavoine S, Ollier S, Dufour AB (2005) Is the originality of a species measurable? Ecology Letters 8:579-586.

  • Pavoine S, Ollier S, Pontier D (2005) Measuring diversity from dissimilarities with Rao’s quadratic entropy: are any dissimilarity indices suitable? Theoretical Population Biology 67:231-239.

  • Pavoine S, Dolédec S (2005) The apportionment of quadratic entropy: a useful alternative for partitioning diversity in ecological data. Environmental and Ecological Statistics 12:125-138.

 

2004

  • Pavoine S, Dufour AB, Chessel D (2004) From dissimilarities among species to dissimilarities among communities: a double principal coordinate analysis. Journal of Theoretical Biology 228:523-537.

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